PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020066001
Common NameVIT_01s0026g01690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 337aa    MW: 38120 Da    PI: 9.9008
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020066001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-1574133155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  GSVIVT01020066001  74 SRFRGVSRHRWTGRFEAHLWDkGSWNVtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 133
                        789******************888855656447*************************98 PP

2AP2513.5e-16176227155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  GSVIVT01020066001 176 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 227
                        89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1674143IPR016177DNA-binding domain
CDDcd000183.62E-1974143No hitNo description
PfamPF008471.0E-1274133IPR001471AP2/ERF domain
SMARTSM003806.1E-2575147IPR001471AP2/ERF domain
PROSITE profilePS5103219.67875141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1575142IPR001471AP2/ERF domain
PRINTSPR003672.3E-57687IPR001471AP2/ERF domain
CDDcd000183.60E-23176237No hitNo description
SuperFamilySSF541711.37E-17176237IPR016177DNA-binding domain
PfamPF008479.6E-12176227IPR001471AP2/ERF domain
SMARTSM003803.8E-25177241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18177236IPR001471AP2/ERF domain
PROSITE profilePS5103218.808177235IPR001471AP2/ERF domain
PRINTSPR003672.3E-5217237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004709anatomyaxillary bud
PO:0025529developmental stagebud dormancy stage
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEMTTVKSEL GLERGRLCTA ETDALEVTKC VKRRRRDPSA VTPGCSKQGE QQKQVLLQAG  60
QSITAIATTM KRSSRFRGVS RHRWTGRFEA HLWDKGSWNV TQRKKGKQVY LGAYDEEESA  120
ARAYDLAALK YWGPSTFTNF PVSDYEKEIE IMQGLTKEEY LASLRRRSSG FSRGVSKYRG  180
VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAAHAYDI AAIEYRGINA VTNFELSTYV  240
RWLRPRATAL TPQEPRSNSI MQASSNCLPN EEVELSFLSP NPFTVDDLAT PLKQEKFQRE  300
VSISPCTKSS SPTALSLLHR SSVFRQLVEK NSNSIE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4768050.0AM476805.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X201377.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270149.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ6X5Y61e-93WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLF6HPF00.0F6HPF0_VITVI; Putative uncharacterized protein
STRINGVIT_01s0026g01690.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-83AP2 family protein